Standards

Standard protocols or guidelines for TOPMed data acquisition and/or processing

Guidelines for sample randomization in assay performance

Data README files

• RNASeq, Phase 4
• CORE Year 3 Broad-BIDMC Metabolomics

Pipielines and Flowcharts

• TOPMed MESA Pilot RNA-seq Pipeline
• CORE Year 1 (Phase 3) Whole Genome Sequencing Final Data Format Requirements
• CORE Year 2 (Phase 4) TOPMed RNA-seq Pipeline
• CORE Year 2 (Phase 4) TOPMed RNA-seq Pipeline Flowchart
• CORE Year 3 (Phase 5) TOPMed RNA-seq Pipeline
• CORE Year 3 (Phase 5) TOPMed RNA-seq Pipeline Flowchart
• CORE Year 3 (Phase 5) Methylation Array Pipeline

Reporting templates (private access)

• TOPMed Metabolomics CORE biweekly reporting template
• TOPMed Methylation CORE biweekly reporting template
• TOPMed RNA CORE biweekly reporting template
• TOPMed WGS CORE weekly reporting template